From Genome Analysis Wiki
Jump to navigationJump to search
No change in size
, 22:31, 19 December 2011
Line 25: |
Line 25: |
| * <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download] (after compiling the source code, copy bgzip and tabix to the "ext" folder above) | | * <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download] (after compiling the source code, copy bgzip and tabix to the "ext" folder above) |
| | | |
− | * <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download] (Rename "beagle.jar" to "beagle.20101226.jar" and copy it to the "ext" folder) | + | * <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download] (rename "beagle.jar" to "beagle.20101226.jar" and copy it to the "ext" folder) |
| | | |
| * Copy the executables <code>bgzip</code> and <code>tabix</code> to /usr/cluster/bin/ OR you could replace "/usr/cluster/bin" with the complete path of the above "ext" folder at line 652 and 654 of umake.pl under $(UMAKE_HOME)/scripts/ | | * Copy the executables <code>bgzip</code> and <code>tabix</code> to /usr/cluster/bin/ OR you could replace "/usr/cluster/bin" with the complete path of the above "ext" folder at line 652 and 654 of umake.pl under $(UMAKE_HOME)/scripts/ |