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==== Rewrite SAM/BAM file ====
==== Rewrite SAM/BAM file ====
*[[BamUtil: convert|Convert]] – Convert between SAM & BAM
*[[BamUtil: convert|Convert]] – Convert between SAM & BAM
*[[SplitBam]] – Split into 1 file per Read Group
*[[BamUtil: splitBam|SplitBam]] – Split into 1 file per Read Group
*[[BamUtil: splitChromosome|SplitChromosome]] – Split into 1 file per Chromosome
*[[BamUtil: splitChromosome|SplitChromosome]] – Split into 1 file per Chromosome
*[[BamUtil: writeRegion|WriteRegion]] – Write only reads in the specified region and/or have the specified read name
*[[BamUtil: writeRegion|WriteRegion]] – Write only reads in the specified region and/or have the specified read name
