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Revision as of 17:15, 19 September 2012
, 17:15, 19 September 2012Add version 1.0.3
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
[[Media:LibStatGen.1.0.3.tgz|LibStatGen.1.0.3.tgz]] - Released 09/19/2012
'''LibStatGen.1.0.2 Release Notes'''
'''LibStatGen.1.0.3 Release Notes'''
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
* Additions:
** Additions:
** Add reverseComplement method to BaseUtilities.h
*** Fix Makefile COMPILE_ANY_CHANGE logic to actually work
*** Fix compile problems on macs
**** Add #include <cstddef> to GzipFileType.h & #include <unistd.h> to MemoryMapArray.h
** General Additions:
*** Update DBSNP processing in GenomeSequence to also accept gzipped files
*** Add support of fasta files in GenomeSequence
*** Update GenomeSequence constructor/open to create the umfa version if it doesn't already exist
*** Update StringAlias to add getAliases
*** Update StringHash to have an option to do case sensitive (instead of always case-insensitive)
*** Make library building PHONY so it is always checked for updates and only updated if objects are newer
***
** BAM Additions:
*** Update BamIndex hex constant to use ULL
*** Cleanup handling of header errors
*** Update SamFileHeader to use case sensitive hashes
*** Make repeated header line keys a warning, not an error
** FASTQ Additions:
*** Update to output average qualities
''' Older Releases'''
''' Older Releases'''
*[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Additions:
*** Add reverseComplement method to BaseUtilities.h
*[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012
*[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
