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To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
[[Media:LibStatGen.1.0.3.tgz|LibStatGen.1.0.3.tgz]] - Released 09/19/2012
[[Media:LibStatGen.1.0.5.tgz|LibStatGen.1.0.5.tgz]] - Released 10/24/2012
'''LibStatGen.1.0.3 Release Notes'''
'''LibStatGen.1.0.5 Release Notes'''
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Additions:
** Updates:
*** Fix Makefile COMPILE_ANY_CHANGE logic to actually work
*** Cleanup compile warnings
*** Support compiling without ZLIB (use: make ZLIB_AVAIL=0)
**** Add #include <cstddef> to GzipFileType.h & #include <unistd.h> to MemoryMapArray.h
** BAM Updates:
** General Additions:
*** Update to add error messages about failing to add a header
*** Update DBSNP processing in GenomeSequence to also accept gzipped files
*** Handle a vtype of 'B' in the TAG field (treats it like a string)
*** Add support of fasta files in GenomeSequence
''' Older Releases'''
''' Older Releases'''
* LibStatGen.1.0.4.tgz - Released skipped
*[[Media:LibStatGen.1.0.3.tgz|LibStatGen.1.0.3.tgz]] - Released 09/19/2012
** Contains classes for general processing (string, reference file, parameters), bam, glf, and fastq
*** Additions:
**** Fix Makefile COMPILE_ANY_CHANGE logic to actually work
**** Fix compile problems on macs
***** Add #include <cstddef> to GzipFileType.h & #include <unistd.h> to MemoryMapArray.h
*** General Additions:
**** Update DBSNP processing in GenomeSequence to also accept gzipped files
**** Add support of fasta files in GenomeSequence
**** Update GenomeSequence constructor/open to create the umfa version if it doesn't already exist
**** Update StringAlias to add getAliases
**** Update StringHash to have an option to do case sensitive (instead of always case-insensitive)
**** Make library building PHONY so it is always checked for updates and only updated if objects are newer
*** BAM Additions:
**** Update BamIndex hex constant to use ULL
**** Cleanup handling of header errors
**** Update SamFileHeader to use case sensitive hashes
**** Make repeated header line keys a warning, not an error
*** FASTQ Additions:
**** Update to output average qualities
*[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
*[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
