Changes

== 5. &nbsp;Report EPACTS results<br>  ==

== 5. &nbsp;Report EPACTS results<br>  ==

For analyses 2 and 3, please upload the three .epacts.gz files to the FTP server:  

For analyses 2 and 3, please upload the two.epacts.gz files to the FTP server:  

#'''Firth test (no BMI): '''&nbsp;DIAGRAMv4_iSNPs_XXX_1000G_KKK_FBC_YYY_ZZZ.epacts.gz  

#'''Firth test (no BMI): '''&nbsp;DIAGRAMv4_iSNPs_XXX_1000G_KKK_FBC_YYY_ZZZ.epacts.gz  

#'''Score test (chr 20, no BMI): &nbsp;'''DIAGRAMv4_iSNPs_XXX_1000G_KKK_SCR_YYY_ZZZ.epacts.gz

#'''Score test (chr 20, no BMI): &nbsp;'''DIAGRAMv4_iSNPs_XXX_1000G_KKK_SCR_YYY_ZZZ.epacts.gz

*PVALUE&nbsp;: P-value

*PVALUE&nbsp;: P-value

The rest of columns varies by statistical tests. For example, in b.score test, SCORE represents score test statistics, N.CASE and N.CTRL represents the case/control counts, and AF.CASE and AF.CTRL represents the case/control allele frequencies.  

The rest of columns varies by statistical tests. For example, in b.score test, SCORE represents score test statistics, N.CASE and N.CTRL represents the case/control counts, and AF.CASE and AF.CTRL represents the case/control allele frequencies.

 

 

= Troubleshooting Common Issues  =

= Troubleshooting Common Issues  =