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Revision as of 10:03, 19 February 2013
, 10:03, 19 February 2013no edit summary
<code>
<code>
# Test the aligner (2 minutes +/- 1 minute)
# Test the aligner (2 minutes +/- 1 minute)
'''/usr/local/gotcloud/bin/gen_biopipeline.pl -test ~/testalign'''
rm -rf ~/testalign # If no error
Running GOTCLOUD TEST, test log in: /home/tpg/testout/biopipeTest.log
Created /home/myuser/testout/biopipetest/Makefiles/biopipe_Sample2.Makefile
Created /home/myuser/testout/biopipetest/Makefiles/biopipe_Sample1.Makefile
---------------------------------------------------------------------
Submitted 2 local commands
Waiting for commands to complete... . . Commands finished in 37 secs with no errors reported
Results from DIFF will be in /home/myuser/testout/diff_logfiles_results.txt
Successful comparison of data in '/home/myuser/testout' and '/usr/local/gotcloud/test/align/expected'
Successfully ran the test case, congratulations!
'''rm -rf ~/testalign''' # If no error
# Test umake (5 minutes +/-2 minute)
# Test umake (5 minutes +/-2 minute)
