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Revision as of 10:06, 19 February 2013
, 10:06, 19 February 2013no edit summary
# Test the aligner (2 minutes +/- 1 minute)
# Test the aligner (2 minutes +/- 1 minute)
'''/usr/local/gotcloud/bin/gen_biopipeline.pl -test ~/testalign'''
'''/usr/local/gotcloud/bin/gen_biopipeline.pl -test ~/testalign'''
Running GOTCLOUD TEST, test log in: /home/tpg/testout/biopipeTest.log
Running GOTCLOUD TEST, test log in: /home/myuser/testalign/biopipeTest.log
Created /home/myuser/testout/biopipetest/Makefiles/biopipe_Sample2.Makefile
Created /home/myuser/testalign/biopipetest/Makefiles/biopipe_Sample2.Makefile
Created /home/myuser/testout/biopipetest/Makefiles/biopipe_Sample1.Makefile
Created /home/myuser/testalign/biopipetest/Makefiles/biopipe_Sample1.Makefile
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Submitted 2 local commands
Submitted 2 local commands
Waiting for commands to complete... . . Commands finished in 37 secs with no errors reported
Waiting for commands to complete... . . Commands finished in 37 secs with no errors reported
Results from DIFF will be in /home/myuser/testout/diff_logfiles_results.txt
Results from DIFF will be in /home/myuser/testalign/diff_logfiles_results.txt
Successful comparison of data in '/home/myuser/testout' and '/usr/local/gotcloud/test/align/expected'
Successful comparison of data in '/home/myuser/testalign' and '/usr/local/gotcloud/test/align/expected'
Successfully ran the test case, congratulations!
Successfully ran the test case, congratulations!
'''rm -rf ~/testalign''' # If no error
'''rm -rf ~/testalign''' # If no error
# Test umake (5 minutes +/-2 minute)
# Test umake (5 minutes +/-2 minute)
'''/usr/local/gotcloud/bin/umake.pl --test ~/testumake'''
rm -rf ~/testumake # If no error
'''rm -rf ~/testumake''' # If no error
</code>
</code>
