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Our dataset consists of 60 individuals from GBR sequenced by the 1000 Genomes Project. These individuals have been sequenced to an average depth of about 4x.
Our dataset consists of 60 individuals from GBR sequenced by the 1000 Genomes Project. These individuals have been sequenced to an average depth of about 4x.
To conserve time and disk-space, our analysis will focus on a small region on chromosome 20, 42900000 - 43200000. We will first map the reads for a single individual (labeled TBD). We will then combine the results with mapped reads from the other 59 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites.
To conserve time and disk-space, our analysis will focus on a small region on chromosome 20, 42900000 - 43200000. We will first map the reads for two individuals (HG00096, HG00100). We will then combine the results with mapped reads from the other 58 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites.
The example dataset we'll be using is available at: ftp://share.sph.umich.edu/gotcloud/gotcloudExample.tar
# Create & Change directory to where you want to install the Tutorail data
# Create & Change directory to where you want to install the Tutorail data
# Download the dataset tar from the ftp site
# Download the dataset tar from the ftp site
