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Tutorial: GotCloud (view source)

Revision as of 12:04, 25 February 2013

32 bytes added ,  12:04, 25 February 2013
→‎STEP 2 : Run GotCloud Alignment Pipeline
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# Screen for sample contamination & swap (VerifyBamID)
 
# Screen for sample contamination & swap (VerifyBamID)
   −
Run the alignment pipeline:
+
Run the alignment pipeline (the example aligns 2 samples) :
 
  $GCHOME/gotcloud align --conf $GCDATA/[[GBR60align.conf]] --outdir $GCOUT
 
  $GCHOME/gotcloud align --conf $GCDATA/[[GBR60align.conf]] --outdir $GCOUT
  
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/6528"

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