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# What is VCF?
# What is VCF?
#* VCF refers to Variant Call Format
#* VCF refers to Variant Call Format
#* See [[http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 | 1000 Genomes wiki page]] for the detailed description of VCF format
#* See [[http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 1000 Genomes wiki page]] for the detailed description of VCF format
# Should input VCF be compressed into certain format?
# Should input VCF be compressed into certain format?
#* Correct. EPACTS assumes that VCF file is bgzipped and tabixed already.
#* Correct. EPACTS assumes that VCF file is bgzipped and tabixed already.
