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--groupf ${EPACTS_DIR}/data/1000G_exome_chr20_example_softFiltered.calls.anno.grp --out out/test.gene.skat \
--groupf ${EPACTS_DIR}/data/1000G_exome_chr20_example_softFiltered.calls.anno.grp --out out/test.gene.skat \
--ped ${EPACTS_DIR}/data/1000G_dummy_pheno.ped --maxAF 0.05 \
--ped ${EPACTS_DIR}/data/1000G_dummy_pheno.ped --maxAF 0.05 \
--chr 20 --pheno QT --cov AGE --cov SEX --test skat --ska-o --run 2
--chr 20 --pheno QT --cov AGE --cov SEX --test skat --skat-o --run 2
==== Example Output ====
==== Example Output ====
