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Run the alignment pipeline (the example aligns 2 samples) :
Run the alignment pipeline (the example aligns 2 samples) :
$GCHOME/gotcloud align --conf $GCDATA/[[#Alignment Configuration File|GBR60align.conf]] --outdir [[#Alignment Output Directory|$GCOUT]]
$GCHOME/gotcloud align --conf $GCDATA/[[#Alignment Configuration File|GBR2align.conf]] --outdir [[#Alignment Output Directory|$GCOUT]]
Upon successful completion of the alignment pipeline (about 1-2 minutes), you will see the following message:
Upon successful completion of the alignment pipeline (about 1-2 minutes), you will see the following message:
