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tabix -p vcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi
tabix -p vcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi
* Even with the presence of VCF file, PED/DAT files are still needed for covariates and phenotypes.
* Even with the presence of VCF file, PED/DAT files are still needed for covariates and phenotypes.
* Are you using PLINK file formats? Converting to VCF is easy. Use WDIST (very similar to PLINK) to make the conversion. Visit this page [https://www.cog-genomics.org/wdist/ | WDIST] to find documentation and downloads for WDIST.
=== Software Options ===
=== Software Options ===
