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, 14:07, 7 November 2013
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| tabix -p vcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi | | tabix -p vcf -f input.vcf.gz ## this command will produce input.vcf.gz.tbi |
| * Even with the presence of VCF file, PED/DAT files are still needed for covariates and phenotypes. | | * Even with the presence of VCF file, PED/DAT files are still needed for covariates and phenotypes. |
| + | * Are you using PLINK file formats? Converting to VCF is easy. Use WDIST (very similar to PLINK) to make the conversion. Visit this page [https://www.cog-genomics.org/wdist/ | WDIST] to find documentation and downloads for WDIST. |
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| === Software Options === | | === Software Options === |