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125 bytes removed
, 16:45, 3 January 2014
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| --useBases : Convert any '=' in the sequence to the appropriate base using the reference (requires --refFile) | | --useBases : Convert any '=' in the sequence to the appropriate base using the reference (requires --refFile) |
| --useEquals : Convert any bases that match the reference to '=' (requires --refFile) | | --useEquals : Convert any bases that match the reference to '=' (requires --refFile) |
− | PhoneHome:
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− | --noPhoneHome : disable PhoneHome (default enabled)
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− | --phoneHomeThinning : adjust the PhoneHome thinning parameter (default 50)
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| </pre> | | </pre> |
| + | {{PhoneHomeParamDesc}} |
| + | |
| {{InBAMInputFile}} | | {{InBAMInputFile}} |
| {{OutBAMOutputFile}} | | {{OutBAMOutputFile}} |