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BamUtil: convert (view source)

Revision as of 17:42, 3 January 2014

56 bytes added ,  17:42, 3 January 2014
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{{PhoneHomeParamDesc}}
 
{{PhoneHomeParamDesc}}
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== Required Parameters==
 
{{InBAMInputFile}}
 
{{InBAMInputFile}}
 
{{OutBAMOutputFile}}
 
{{OutBAMOutputFile}}
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== Optional Parameters ==
 
{{refFile}}
 
{{refFile}}
   −
== Left Shift Indels in the CIGAR (<code>--lshift</code>) ==
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=== Left Shift Indels in the CIGAR (<code>--lshift</code>) ===
    
Left shift indels as far as they can go in the read.  
 
Left shift indels as far as they can go in the read.  
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{{paramsParameter}}
 
{{paramsParameter}}
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== Recover a corrupted BAM file (<code>--recover</code>) ==
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=== Recover a corrupted BAM file (<code>--recover</code>) ===
    
See [[#BAM File Recovery |BAM File Recovery]].
 
See [[#BAM File Recovery |BAM File Recovery]].
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/9219"

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