Difference between revisions of "Main Page"
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# Rare Variant Analysis using [[rvTests]] | # Rare Variant Analysis using [[rvTests]] | ||
# Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]] | # Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]] | ||
| − | # | + | # C++ APIs for sequence analsysis using [[C++ Library: libStatGen]] |
These tools and additional tools can be found on the [[Software]] page. | These tools and additional tools can be found on the [[Software]] page. | ||
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| + | We are developing Genome/Sequencing Processing Pipelines for anyone to use: [[Pipelines]] | ||
== High Level Tutorials == | == High Level Tutorials == | ||
Revision as of 14:34, 5 November 2012
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Abecasis Group Wiki
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Welcome!
Welcome to our brand new wiki!
If you would like to contribute, log-in or request an account. We recommend using your e-mail address or Michigan uniqname as your user id.
For basic instructions, see the Wikipedia Tutorial.
Sequence Analysis Tools
We are developing software tools for the analysis of next generation sequence data.
These tools include:
- Variant Calling with glfSingle and glfMultiples
- Variant Calling and De Novo Mutation Detection in Families with Polymutt
- Variant Annotations using vcfCodingSnps
- Rare Variant Analysis using rvTests
- Quality control using FastQValidator, VerifyBamID, and BamValidator
- C++ APIs for sequence analsysis using C++ Library: libStatGen
These tools and additional tools can be found on the Software page.
We are developing Genome/Sequencing Processing Pipelines for anyone to use: Pipelines
High Level Tutorials
Some high-level tutorials on the analysis of next generation sequence data:
Projects
SardiNIA - The SardiNIA longitudinal study of aging.
1000 Genomes Project Pilot 1 SNP Calling
Learn Genetics
Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here.
General Resources
Abecasis Group Meeting
3:00-4:30 p.m. on Mondays, room 2610, SPH I.
