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== About bafRegress ==
== About bafRegress ==
'''bafRegress''' is actually a pair of scripts, one python and one R. The python script is the main interface and handles the parsing of Illumina final report files. The R script actually performs the regression model and provides the contamination estimates.
'''bafRegress''' is actually a pair of scripts, one Python (2.7) and one R. The Python script is the main interface and handles the parsing of Illumina final report files. The R script actually performs the regression model and provides the contamination estimates.
To use this program, you will need Final Report files from BeadStudio/GenomeStudio. You will need to have columns for the genotypes using the A/B Illumina coded alleles as well as the Illumina reported B allele frequency in addition to the standard sample/marker columns.
To use this program, you will need Final Report files from BeadStudio/GenomeStudio. You will need to have columns for the genotypes using the A/B Illumina coded alleles as well as the Illumina reported B allele frequency in addition to the standard sample/marker columns.
