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93 bytes added
, 07:36, 6 May 2013
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| If there are installation problems please let Scott know. | | If there are installation problems please let Scott know. |
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− | '''NOTE:''' It is essential that each trait is corrected for covariates, the residuals are inverse normalized, and then association testing is conducted, in that order. The Rare-Metal-Worker software has this functionality when you jointly specify | + | '''NOTE:''' It is essential that, after each trait has been log-transformed (except for CPD) and corrected for covariates, the residuals are inverse normalized, and then association testing is conducted, in that order. The Rare-Metal-Worker software has this functionality when you jointly specify |
| --makeResiduals --inverseNormalize | | --makeResiduals --inverseNormalize |
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− | | + | Alternatively, you could correct for covariates using your software of choice (R, SAS, etc.) prior to using Rare-Metal-Worker, but still specify --makeResiduals and --inverseNormalize. You still want to specify --makeResiduals to correct for the intercept. |
− | Alternatively, you could correct for covariates prior to using Rare-Metal-Worker, but still specify --makeResiduals and --inverseNormalize. You still specify --makeResiduals in order to correct for the intercept. | |
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| ==== Submitting Results for Meta-Analysis ==== | | ==== Submitting Results for Meta-Analysis ==== |