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== Obtaining EPACTS ==
== Obtaining EPACTS ==
* The official release of EPACTS software is available at http://csg-old.sph.umich.edu/kang/epacts/download/index.html
* The official release of EPACTS software is available at https://github.com/statgen/EPACTS
** From the CSG cluster, it is available at /net/fantasia/home/bin/epacts/
** From the CSG cluster, it is available at /net/fantasia/home/bin/epacts/
* Note that R (version 2.10 or higher) and gnuplot (version 4.2 or higher) must be installed in order to run EPACTS correctly.
* Note that R (version 2.10 or higher) and gnuplot (version 4.2 or higher) must be installed in order to run EPACTS correctly.
| Clement Ma
| Clement Ma
|-
|-
| b.spa
| b.spa2
| Binary
| Binary
| YES <br>
| YES <br>
| Linear Wald Test
| Linear Wald Test
| Hyun Min Kang <br> (as implemented in lm in R)
| Hyun Min Kang <br> (as implemented in lm in R)
|-
|-
| q.linear
| q.linear
In order to use EPACTS in the CSG cluster, you do not need to install them. You can directly use or make a copy of the in-house release version at
In order to use EPACTS in the CSG cluster, you do not need to install them. You can directly use or make a copy of the in-house release version at
/net/fantasia/home/hmkang/bin/epacts/
/net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts/
* If you want to access previous versions, visit http://csg-old.sph.umich.edu/kang/epacts/download
* If you want to access previous versions, visit http://csg-old.sph.umich.edu/kang/epacts/download
== Getting Started With Examples ==
== Getting Started With Examples ==
If you are using EPACTS from the CSG cluster, please set the following environment variable
If you are using EPACTS from the CSG cluster, please set the following environment variable
EPACTS_DIR=/net/fantasia/home/hmkang/bin/epacts (in bash)
EPACTS_DIR=/net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts (in bash)
setenv EPACTS_DIR /net/fantasia/home/hmkang/bin/epacts (in csh)
setenv EPACTS_DIR /net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts (in csh)
If you downloaded EPACTS binary and please set EPACTS_DIR to the full path of the downloaded and uncompressed directory.
If you downloaded EPACTS binary and please set EPACTS_DIR to the full path of the downloaded and uncompressed directory.
