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| Clement Ma
| Clement Ma
|-
|-
| b.spa
| b.spa2
| Binary
| Binary
| YES <br>
| YES <br>
| Linear Wald Test
| Linear Wald Test
| Hyun Min Kang <br> (as implemented in lm in R)
| Hyun Min Kang <br> (as implemented in lm in R)
|-
|-
| q.linear
| q.linear
In order to use EPACTS in the CSG cluster, you do not need to install them. You can directly use or make a copy of the in-house release version at
In order to use EPACTS in the CSG cluster, you do not need to install them. You can directly use or make a copy of the in-house release version at
/net/fantasia/home/hmkang/bin/epacts/
/net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts/
* If you want to access previous versions, visit http://csg-old.sph.umich.edu/kang/epacts/download
* If you want to access previous versions, visit http://csg-old.sph.umich.edu/kang/epacts/download
== Getting Started With Examples ==
== Getting Started With Examples ==
If you are using EPACTS from the CSG cluster, please set the following environment variable
If you are using EPACTS from the CSG cluster, please set the following environment variable
EPACTS_DIR=/net/fantasia/home/hmkang/bin/epacts (in bash)
EPACTS_DIR=/net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts (in bash)
setenv EPACTS_DIR /net/fantasia/home/hmkang/bin/epacts (in csh)
setenv EPACTS_DIR /net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts (in csh)
If you downloaded EPACTS binary and please set EPACTS_DIR to the full path of the downloaded and uncompressed directory.
If you downloaded EPACTS binary and please set EPACTS_DIR to the full path of the downloaded and uncompressed directory.
# How can I read the EMMAX kinship file from produced from EPACTS?
# How can I read the EMMAX kinship file from produced from EPACTS?
# * You can run the following command to dump your kinship matrix into a human-readable text format.
# * You can run the following command to dump your kinship matrix into a human-readable text format.
$(EPACTS_DIR)/bin/epacts/bin/pEmmax kin-util --kinf [input.kinf] --outf [output.prefix] --dump
$(EPACTS_DIR)/bin/pEmmax kin-util --kinf [input.kinf] --outf [output.prefix] --dump
=== More questions ===
=== More questions ===
