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144 bytes removed
, 08:03, 19 February 2019
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| | Clement Ma | | | Clement Ma |
| |- | | |- |
− | | b.spa | + | | b.spa2 |
| | Binary | | | Binary |
| | YES <br> | | | YES <br> |
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| | Linear Wald Test | | | Linear Wald Test |
| | Hyun Min Kang <br> (as implemented in lm in R) | | | Hyun Min Kang <br> (as implemented in lm in R) |
− | |-
| |
− | | q.score
| |
− | | Quantitative
| |
− | | YES <br> (Regressed Out)
| |
− | | Fast
| |
− | | Quantitative Score Test <br> (from Lin DY and Tang ZZ, AJHG 2011 89:354-67)
| |
− | | Clement Ma
| |
| |- | | |- |
| | q.linear | | | q.linear |
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| In order to use EPACTS in the CSG cluster, you do not need to install them. You can directly use or make a copy of the in-house release version at | | In order to use EPACTS in the CSG cluster, you do not need to install them. You can directly use or make a copy of the in-house release version at |
| | | |
− | /net/fantasia/home/hmkang/bin/epacts/ | + | /net/fantasia/home/hmkang/tools/epacts-3.3.0/bin/epacts/ |
| | | |
| * If you want to access previous versions, visit http://csg-old.sph.umich.edu/kang/epacts/download | | * If you want to access previous versions, visit http://csg-old.sph.umich.edu/kang/epacts/download |
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| # How can I read the EMMAX kinship file from produced from EPACTS? | | # How can I read the EMMAX kinship file from produced from EPACTS? |
| # * You can run the following command to dump your kinship matrix into a human-readable text format. | | # * You can run the following command to dump your kinship matrix into a human-readable text format. |
− | $(EPACTS_DIR)/bin/epacts/bin/pEmmax kin-util --kinf [input.kinf] --outf [output.prefix] --dump | + | $(EPACTS_DIR)/bin/pEmmax kin-util --kinf [input.kinf] --outf [output.prefix] --dump |
| | | |
| === More questions === | | === More questions === |