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| | Please join in the [http://groups.google.com/group/epacts EPACTS Google Group] to ask / discuss / comment about EPACTS. | | Please join in the [http://groups.google.com/group/epacts EPACTS Google Group] to ask / discuss / comment about EPACTS. |
| | | | |
| − | == ChangeLog == | + | == Lastest ChangeLog == |
| | * December 4th, 2012 : EPACTS v3.2.0 release | | * December 4th, 2012 : EPACTS v3.2.0 release |
| | ** R package installation bug (for some users) was fixed | | ** R package installation bug (for some users) was fixed |
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| | ** SKAT version is updated to 0.81 | | ** SKAT version is updated to 0.81 |
| | ** --bprange option is added to allow testing for small region size | | ** --bprange option is added to allow testing for small region size |
| − | * Additional minor bug fixes
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| − | * December 4th, 2012 : EPACTS v3.1.0 release
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| − | ** Removed dependency on libR.so
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| | ** Additional minor bug fixes | | ** Additional minor bug fixes |
| − | ** --bprange option is added to allow testing for small region size
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| − | * November 25th, 2012 : EPACTS v3.0.0 release
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| − | ** Restructured with source code release (with autoconf / automake / libtools)
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| − | ** Added zoom plot feature
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| − | ** FRAC_BURDEN keyword was replace to FRAC_WITH_RARE for groupwise testing
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| − | * October 26th, 2012 : EPACTS v2.2.0-beta is released with the following updates
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| − | ** Added --max-mac option
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| − | ** Fixed Firth's bias-corrected test (by Clement Ma)
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| − | ** Added more informative warning messages when index files do not exist
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| − | ** Fixed the bug in the epacts-plot in plotting ties
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| − | ** Fixed errors in the MAF estimates per case and control
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| − | ** Fixed bug in --minRSQ option
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| − | * September 28, 2012 : EPACTS v2.11-beta is released with the following updates
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| − | ** Counts and allele frequencies for case/control added for binary tests
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| − | ** --max-maf parameter is added
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| − | ** Fixed EMMAX error in MAF in the output
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| − | ** More informative error messages
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| − | * September 27, 2012 : EPACTS v2.1-beta is released with the following updates
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| − | ** EMMAX interface is changed. --kinOnly option is related with a new command '''make-kin'''
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| − | ** SKAT-O is upgraded to version 0.77 with additional configurable parameter settings
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| − | ** Some parameter names are renamed (e.g. --min-maf, --min-mac)
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| − | ** Many minor bugs are fixed
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| − | * Jul 6, 2012 : EPACTS v2.01-beta is released with the following updates
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| − | ** SKAT-O is upgraded to version 0.76
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| − | ** Fixed minor bugs in option names (Thanks to Xueling Sim)
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| − | * Jul 3, 2012 : EPACTS v2.0-beta is released with the following updates
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| − | ** Major restructuring of the software
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| − | ** Annotation software is switched with built-in application
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| − | ** Addition of SKAT-O and EMMAX burden test
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| − | ** Minor bug fixes
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| − | * Apr 8, 2012 : EPACTS v1.2-alpha is released with the following updates, in addition to the following updates
| |
| − | ** EMMAX bug in handling covariates was fixed
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| − | ** Variable Threshold Test is added
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| − | ** Variable Threshold Test with genomic score (e.g. GERP or PhyloP) is added.
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| − | * Apr 4, 2012 : EPACTS v1.1-alpha is released with the following updates, in addition to minor updates
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| − | ** EMMAX burden test (Hyun Min Kang)
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| − | ** Likelihood ratio test (Clement Ma)
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| − | ** Updated version of Firth bias-corrected likelihood ratio test (Clement Ma)
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| − | ** Updated version of EMMAX single variant test (Hyun Min Kang)
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| − | * Mar 29, 2012 : EPACTS v1.0-alpha is released
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| | | | |
| | == Key Features == | | == Key Features == |
