1,120
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Example Output
20 60962895 60963559 20:60962895-60963559_RPS21 266 0.06015 6 3 2 0.016409 0
20 60962895 60963559 20:60962895-60963559_RPS21 266 0.06015 6 3 2 0.016409 0
20 55904961 55917801 20:55904961-55917801_SPO11 266 0.011278 11 3 3 0.018031 0
20 55904961 55917801 20:55904961-55917801_SPO11 266 0.011278 11 3 3 0.018031 0
The key columns represents:
* NS : Number of phenotyped samples with non-missing genotypes
* FRAC_BURDEN : Fraction of individual carrying rare variants below --max-maf (default : 0.05) threshold.
* NUM_ALL_VARS : Number of all variants defining the group.
* NUM_PASS_VARS : Number of variants passing the --min-maf, --min-mac, --max-maf, --min-callrate thresholds
* NUM_SING_VARS : Number of singletons among variants in NUM_PASS_VARS
* PVALUE : P-value of burden tests
* Other parameters are test specific auxiliary parameters.
=== Specialized Instruction for EMMAX tests ===
=== Specialized Instruction for EMMAX tests ===
