3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchFastQ Validation Criteria (view source)
Revision as of 14:01, 7 September 2011
, 14:01, 7 September 2011Update path to fastqvalidator
== FastQ Sequence Validation Criteria ==
== FastQ Sequence Validation Criteria ==
{| class="wikitable" style="width:100%"
The following validation criteria is used by [[C++ Class: FastQFile|FastQFile class]] and the [[fastQValidator|the FastQ Validator Program]] when reading a FastQ Sequence
{| class="wikitable" style="width:100%" border="1"
|+ style="font-size:150%" |'''Sequence Identifier Line'''
|+ style="font-size:150%" |'''Sequence Identifier Line'''
! width="50%"|Validation Criteria
! width="50%"|Validation Criteria
| All characters in the base sequence must be in the allowable set specified via configuration.
| All characters in the base sequence must be in the allowable set specified via configuration.
* Base Only: A C T G N a c t g n
* Base Only: A C T G N a c t g n
* Color Space Only: 0 1 2 3 .(period)
* Color Space Only: 0 1 2 3 .(period) Color Space files must start with a 1 character primer base.
| ERROR on Line <current line #>: Invalid character ('<invalid char>') in base sequence.
| ERROR on Line <current line #>: Invalid character ('<invalid char>') in base sequence.
|-
|-
