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GotCloud: Alignment Pipeline (view source)

Revision as of 10:13, 29 October 2012

133 bytes removed ,  10:13, 29 October 2012
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Login as a normal user (not as root) and do:
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Back to the beginning [http://genome.sph.umich.edu/wiki/Pipelines]
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#  Test the aligner (fast, about 3 minutes)
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Running the aligner is straightforward:
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/usr/local/biopipe/bin/gen_biopipeline.pl --test ~/testalign
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  rm -rf ~/testalign              # If no error
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<code>
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  '''cd ~/myseq'''
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#  Test umake  (longer, about 15 minutes)
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  ''' /usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ???
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  /usr/local/biopipe/bin/umake.pl --test ~/testumake
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</code>
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rm -rf ~/testumake              # If no error
 
Terry Gliedt
283

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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/5668"

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