From Genome Analysis Wiki
Jump to navigationJump to search
133 bytes removed
, 10:13, 29 October 2012
Line 1: |
Line 1: |
− | Login as a normal user (not as root) and do:
| + | Back to the beginning [http://genome.sph.umich.edu/wiki/Pipelines] |
| | | |
− | # Test the aligner (fast, about 3 minutes)
| + | Running the aligner is straightforward: |
− | /usr/local/biopipe/bin/gen_biopipeline.pl --test ~/testalign
| + | |
− | rm -rf ~/testalign # If no error | + | <code> |
− |
| + | '''cd ~/myseq''' |
− | # Test umake (longer, about 15 minutes)
| + | ''' /usr/local/biopipe/bin/gen_biopipeline.pl -out aligner -index ??? |
− | /usr/local/biopipe/bin/umake.pl --test ~/testumake | + | </code> |
− | rm -rf ~/testumake # If no error
| |