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Revision as of 15:18, 8 August 2014
, 15:18, 8 August 2014→Reference Files
Configuration File Example Reference Settings:
Configuration File Example Reference Settings:
REF = path/file.fa
REF = path/file.fa
INDEL_PREFIX = path/indels.sites.hg19
INDEL_PREFIX = path/indels.sites.hg19 # or INDEL_VCF = path/indels.sites.hg19.vcf if all chromosomes are in a single VCF
DBSNP_VCF = path/dbsnp_135_b37.vcf.gz
DBSNP_VCF = path/dbsnp_135_b37.vcf.gz
HM3_VCF = path/hapmap_3.3.b37.sites.vcf.gz
HM3_VCF = path/hapmap_3.3.b37.sites.vcf.gz
