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86 bytes added
, 15:18, 8 August 2014
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| Configuration File Example Reference Settings: | | Configuration File Example Reference Settings: |
| REF = path/file.fa | | REF = path/file.fa |
− | INDEL_PREFIX = path/indels.sites.hg19 | + | INDEL_PREFIX = path/indels.sites.hg19 # or INDEL_VCF = path/indels.sites.hg19.vcf if all chromosomes are in a single VCF |
| DBSNP_VCF = path/dbsnp_135_b37.vcf.gz | | DBSNP_VCF = path/dbsnp_135_b37.vcf.gz |
| HM3_VCF = path/hapmap_3.3.b37.sites.vcf.gz | | HM3_VCF = path/hapmap_3.3.b37.sites.vcf.gz |