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Jump to navigationJump to searchGotCloud: Variant Calling Pipeline (view source)
Revision as of 16:53, 23 October 2014
, 16:53, 23 October 2014→BAM List File
** multiple BAMs per individual may be provided, but should all be on the same line of the list file
** multiple BAMs per individual may be provided, but should all be on the same line of the list file
** population label is optional - it will default to <code>ALL</code>
** population label is optional - it will default to <code>ALL</code>
*** population is only used by Thunder (part of ldrefine pipeline)
*** only used by Thunder (part of ldrefine pipeline)
*** if all samples are from the same population, population label can be skipped or you can just specify <code>ALL</code> for the population label for each sample.
*** if all samples are from the same population, population label can be skipped or you can just specify <code>ALL</code> for the population label for each sample.
