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186 bytes added
, 16:52, 23 October 2014
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− | Replace vc.conf with the approprate path/name of the user's configuration file. | + | * Replace <code>vc.conf</code> with the path/name of the user's configuration file |
− | | + | ** If you are not overriding any defaults, you can alternatively specify <code>--list path/bam.list</code> replacing <code>path/bam.list</code> with the path/name of your BAM list file. |
− | If <code>OUT_DIR</code> is not defined in the configuration file, add <code>--outdir</code> followed by the path to the user's desired output directory. | + | * Replace <code>2</code> following <code>--numjobs</code> with the number of jobs to be run in parallel |
− | | + | * If <code>OUT_DIR</code> is not defined in the configuration file, add <code>--outdir</code> followed by the path to the user's desired output directory. |
− | Update the value following <code>--numjobs</code> to the appropriate number of jobs to be run in parallel.
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