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To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012
[[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012
'''LibStatGen.1.0.1 Release Notes'''
'''LibStatGen.1.0.2 Release Notes'''
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
* Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
* BAM Additions:
* Additions:
** Ability to use require/exclude flags when reading
** Add reverseComplement method to BaseUtilities.h
''' Older Releases'''
''' Older Releases'''
*[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** BAM Additions:
*** Ability to use require/exclude flags when reading
*** CigarHelper for soft clipping
*** Fixed bug in BamIndex that wasn't closing the file
*** Additional cleanup/updates, see https://github.com/statgen/libStatGen/commits/master/bam for all changes between 10/10/2011 and 05/04/2012.
** General Additions:
*** Modifications to improve file handling/string processing
*** Fixed some compile warnings
*** Update Parameters class to always print warnings about unknown parameters to stderr
*** Update PedigreePerson to create/delete the strings object
*** Cleanup GenomeSequence to remove code that is also in BaseAsciiMap
** Samtools Modifications:
*** Do not use knetfile and fix compile warning
*[[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011
*[[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Initial release of libStatGen. It started from the library found in the deprecated StatGen repository.
** Initial release of libStatGen. It started from the library found in the deprecated StatGen repository.
