From Genome Analysis Wiki
Jump to navigationJump to search
910 bytes added
, 11:34, 4 May 2012
Line 10: |
Line 10: |
| To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. | | To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. |
| | | |
− | [[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011 | + | [[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012 |
| | | |
− | '''LibStatGen.1.0.0 Release Notes''' | + | '''LibStatGen.1.0.1 Release Notes''' |
− | * Initial release of libStatGen. It started from the library found in the deprecated StatGen repository.
| |
| * Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq | | * Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq |
| + | * BAM Additions: |
| + | ** Ability to use require/exclude flags when reading |
| + | ** CigarHelper for soft clipping |
| + | ** Fixed bug in BamIndex that wasn't closing the file |
| + | ** Additional cleanup/updates, see https://github.com/statgen/libStatGen/commits/master/bam for all changes between 10/10/2011 and 05/04/2012. |
| + | * General Additions: |
| + | ** Modifications to improve file handling/string processing |
| + | ** Fixed some compile warnings |
| + | ** Update Parameters class to always print warnings about unknown parameters to stderr |
| + | ** Update PedigreePerson to create/delete the strings object |
| + | ** Cleanup GenomeSequence to remove code that is also in BaseAsciiMap |
| + | * Samtools Modifications: |
| + | ** Do not use knetfile and fix compile warning |
| + | |
| + | ''' Older Releases''' |
| + | *[[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011 |
| + | ** Initial release of libStatGen. It started from the library found in the deprecated StatGen repository. |
| + | ** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq |