3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
[[Media:LibStatGen.1.0.8.tgz|LibStatGen.1.0.8.tgz]] - Released 1/29/2013
[[Media:LibStatGen.1.0.9.tgz|LibStatGen.1.0.9.tgz]] - Released 7/7/2013
'''LibStatGen.1.0.8 Release Notes'''
'''LibStatGen.1.0.9 Release Notes'''
* Contains classes for general processiong (string, reference file, parameters), bam, glf, fastq, and vcf
* Contains classes for general processiong (string, reference file, parameters), bam, glf, fastq, and vcf
** Updates:
** Updates:
*** Added VCF file handling (merged the vcf branch to master)
*** Update Makefile processing to check for a Makefile in the test directory before recursively calling make in there
*** Add support for reading Tabix files
*** Replace CFLAGS wtih COMPFLAGS
*** Add ReusableVector class that holds vectors that will remove only the last or be reset & reused without clearing memory.
*** Update the Windows WIN32 if statements
**General Updates:
*** Add boundary check to StringBasics memory
*** Added support for new CIGAR characters (X & =)
*** Update bug in PedigreeLoader to specify WHITESPACE
*** add accessors for getting tabix information
** Vcf Updates:
*** add ability to drop trailing missing Genotype fields
*** check that the tabix index is for VCF file type
*** Fix broken dependency
** Bam Updates:
*** SamHeaderRecord: add accessor to get the value for the key
*** update some classes to have virtual destructors
''' Older Releases'''
''' Older Releases'''
*[[Media:LibStatGen.1.0.8.tgz|LibStatGen.1.0.8.tgz]] - Released 1/29/2013
** Contains classes for general processiong (string, reference file, parameters), bam, glf, fastq, and vcf
*** Updates:
**** Added VCF file handling (merged the vcf branch to master)
**** Add support for reading Tabix files
**** Add ReusableVector class that holds vectors that will remove only the last or be reset & reused without clearing memory.
*[[Media:LibStatGen.1.0.7.tgz|LibStatGen.1.0.7.tgz]] - Released 1/29/2013
*[[Media:LibStatGen.1.0.7.tgz|LibStatGen.1.0.7.tgz]] - Released 1/29/2013
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
