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, 09:12, 15 April 2010
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| : This option allows you to plot results for all markers within a specific distance (e.g. 500kb) of an index SNP. To use this option, set column 1 to have the name of the index SNP (e.g. ''rs2'' below) and set column 5 to specify the width of the region of interest (e.g. 500kb below). Here is an example: | | : This option allows you to plot results for all markers within a specific distance (e.g. 500kb) of an index SNP. To use this option, set column 1 to have the name of the index SNP (e.g. ''rs2'' below) and set column 5 to specify the width of the region of interest (e.g. 500kb below). Here is an example: |
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− | <code lang="text"> | + | <quote> |
| Feature chr start end flank plot arguments | | Feature chr start end flank plot arguments |
| rs1 na na na 500kb yes rfrows=3 weightCol=”N” snpset=”HapMap” metalRug=”Our SNPs” | | rs1 na na na 500kb yes rfrows=3 weightCol=”N” snpset=”HapMap” metalRug=”Our SNPs” |
− | </code> | + | </quote> |
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| ; Plotting a region flanking an interesting SNP | | ; Plotting a region flanking an interesting SNP |