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Abecasis Group Wiki
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Welcome!
Welcome to our brand new wiki!
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For basic instructions, see the Wikipedia Tutorial.
Sequence Analysis Tools
We are developing software tools for the analysis of next generation sequence data.
These tools include:
- Variant Calling with glfSingle, glfTrio and glfMultiples
- Variant Calling and De Novo Mutation Detection in Families with Polymutt
- Variant Annotations using vcfCodingSnps
- Rare Variant Analysis using rvTests
- Quality control using FastQValidator, VerifyBamID, and BamValidator
- File Readers using BamFile and FastQFile
- File Conversions using bam2FastQ
These tools and additional tools can be found on the Software page.
High Level Tutorials
Some high-level tutorials on the analysis of next generation sequence data:
Projects
SardiNIA - The SardiNIA longitudinal study of aging.
1000 Genomes Project Pilot 1 SNP Calling
Learn Genetics
Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here.
General Resources
Abecasis Group Meeting
3:00-4:30 p.m. on Mondays, room 2610, SPH I.