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| For 1000 Genome SNPs, we currently recommend that any markers with estimated r<sup>2</sup> of <0.5 should be treated with caution. This is a bit more conservative than the threshold of 0.3 we recommend for HapMap; but 1000 Genome SNP genotypes are also (as of June 2010) of lower quality. | | For 1000 Genome SNPs, we currently recommend that any markers with estimated r<sup>2</sup> of <0.5 should be treated with caution. This is a bit more conservative than the threshold of 0.3 we recommend for HapMap; but 1000 Genome SNP genotypes are also (as of June 2010) of lower quality. |
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| + | == Questions and Comments == |
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| + | Please contact [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:cfuchsb@umich.edu Christian Fuchsberger (minimac)] or == [mailto:yunli@med.unc.edu Yun Li (MaCH)]. |