550
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchMinimac: 1000 Genomes Imputation Cookbook (view source)
Revision as of 18:27, 10 February 2011
, 18:27, 10 February 2011no edit summary
For 1000 Genome SNPs, we currently recommend that any markers with estimated r<sup>2</sup> of <0.5 should be treated with caution. This is a bit more conservative than the threshold of 0.3 we recommend for HapMap; but 1000 Genome SNP genotypes are also (as of June 2010) of lower quality.
For 1000 Genome SNPs, we currently recommend that any markers with estimated r<sup>2</sup> of <0.5 should be treated with caution. This is a bit more conservative than the threshold of 0.3 we recommend for HapMap; but 1000 Genome SNP genotypes are also (as of June 2010) of lower quality.
== Questions and Comments ==
Please contact [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:cfuchsb@umich.edu Christian Fuchsberger (minimac)] or == [mailto:yunli@med.unc.edu Yun Li (MaCH)].
