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polymutt -p input.ped -d input.dat --in_vcf input.vcf --out_vcf out.vcf --nthreads 4
polymutt -p input.ped -d input.dat --in_vcf input.vcf --out_vcf out.vcf --nthreads 4
Examples for ''de novo'' mutation detection (works only for GLF files):
Examples for ''de novo'' mutation detection from GLF input files
polymutt -p input.ped -d input.dat -g input.gif --denovo --out_vcf out.denovo.vcf --nthreads 4
polymutt -p input.ped -d input.dat -g input.gif --denovo --out_vcf out.denovo.vcf --nthreads 4
polymutt -p input.ped -d input.dat -g input.gif --denovo --rate_denovo 1.2e-06 --out_vcf out.denovo.vcf --nthreads 4
polymutt -p input.ped -d input.dat -g input.gif --out_vcf out.vcf --denovo
Examples of calling X, Y and MT (works only for variants but not de novo mutations):
Examples of calling X, Y and MT (works only for variants but not de novo mutations):
