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49 bytes removed
, 18:42, 26 November 2013
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| polymutt -p input.ped -d input.dat --in_vcf input.vcf --out_vcf out.vcf --nthreads 4 | | polymutt -p input.ped -d input.dat --in_vcf input.vcf --out_vcf out.vcf --nthreads 4 |
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− | Examples for ''de novo'' mutation detection (works only for GLF files): | + | Examples for ''de novo'' mutation detection from GLF input files |
| polymutt -p input.ped -d input.dat -g input.gif --denovo --out_vcf out.denovo.vcf --nthreads 4 | | polymutt -p input.ped -d input.dat -g input.gif --denovo --out_vcf out.denovo.vcf --nthreads 4 |
− | polymutt -p input.ped -d input.dat -g input.gif --denovo --rate_denovo 1.2e-06 --out_vcf out.denovo.vcf --nthreads 4 | + | polymutt -p input.ped -d input.dat -g input.gif --out_vcf out.vcf --denovo |
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| Examples of calling X, Y and MT (works only for variants but not de novo mutations): | | Examples of calling X, Y and MT (works only for variants but not de novo mutations): |