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, 18:30, 18 June 2011
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| Some of command line options are explained below and others are self-explanatory. | | Some of command line options are explained below and others are self-explanatory. |
| | | |
− | -c : minimum cutoff of posterior probability to output a variant [''Default: 0.5''] | + | -c : minimum cutoff of posterior probability to output a variant ['''Default: 0.5'''] |
| --theta : scaled mutation rate per site [''Default: 0.001''] | | --theta : scaled mutation rate per site [''Default: 0.001''] |
| --tstv: prior of ts:tv ratio [''Default: 2.0''] | | --tstv: prior of ts:tv ratio [''Default: 2.0''] |