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* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --vcX is used.
* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --vcX is used.
* The default for --xStart is 2699520 and default for --xEnd is 154931044, according to NCBI genome build 37.
* The default for --xStart is 2699520 and default for --xEnd is 154931044, according to NCBI genome build 37.
Please refer to the following for the analysis of X-linked variants [[RAREMETALWORKER_X|chromosome X]].
=== Handling Unrelated Individuals ===
=== Handling Unrelated Individuals ===
