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= Troubleshooting =
= Troubleshooting =
If you have additional questions or comments, please email Mary Kate Wing (mktrost@umich.edu).
If you have additional questions or comments, please raise an issue in the [https://github.com/statgen/samtools-0.1.7a-hybrid Github repository].
; I get a 'floating point exception' with a command like <code>samtools-hybrid pileup $bam -g -f $fasta > $bam.glf</code>
; I get a 'floating point exception' with a command like <code>samtools-hybrid pileup $bam -g -f $fasta > $bam.glf</code>
: One potential issue is that the fasta index file (.fai file) is either not correct for the fasta file or it is not in the exact format that samtools-hybrid expects. Try removing the .fai file and let samtools-hybrid regenerate the file. That will ensure that samtools-hybrid is reading the file in the format it expects.
: One potential issue is that the fasta index file (.fai file) is either not correct for the fasta file or it is not in the exact format that samtools-hybrid expects. Try removing the .fai file and let samtools-hybrid regenerate the file. That will ensure that samtools-hybrid is reading the file in the format it expects.
