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, 17:22, 11 September 2021
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| = Troubleshooting = | | = Troubleshooting = |
− | If you have additional questions or comments, please email Mary Kate Wing (mktrost@umich.edu). | + | If you have additional questions or comments, please raise an issue in the [https://github.com/statgen/samtools-0.1.7a-hybrid Github repository]. |
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| ; I get a 'floating point exception' with a command like <code>samtools-hybrid pileup $bam -g -f $fasta > $bam.glf</code> | | ; I get a 'floating point exception' with a command like <code>samtools-hybrid pileup $bam -g -f $fasta > $bam.glf</code> |
| : One potential issue is that the fasta index file (.fai file) is either not correct for the fasta file or it is not in the exact format that samtools-hybrid expects. Try removing the .fai file and let samtools-hybrid regenerate the file. That will ensure that samtools-hybrid is reading the file in the format it expects. | | : One potential issue is that the fasta index file (.fai file) is either not correct for the fasta file or it is not in the exact format that samtools-hybrid expects. Try removing the .fai file and let samtools-hybrid regenerate the file. That will ensure that samtools-hybrid is reading the file in the format it expects. |