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18 bytes added
, 14:57, 21 May 2015
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| Generate the plot for European ancestry: | | Generate the plot for European ancestry: |
− | Rscript plotHGDP.r $HGDP/HGDP.633K.euro.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-Euro.SeqPC.coord | + | Rscript plotHGDP.r $SSREF/HGDP/HGDP.633K.euro.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-Euro.SeqPC.coord |
| or for East Asian ancestry | | or for East Asian ancestry |
− | Rscript plotHGDP.r $HGDP/HGDP.633K.easia.2.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-EAsia.SeqPC.coord | + | Rscript plotHGDP.r $SSREF/HGDP/HGDP.633K.easia.2.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-EAsia.SeqPC.coord |
| or for Central/South Asian ancestry | | or for Central/South Asian ancestry |
− | Rscript plotHGDP.r $HGDP/HGDP.633K.csasia.2.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-CSAsia.SeqPC.coord | + | Rscript plotHGDP.r $SSREF/HGDP/HGDP.633K.csasia.2.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-CSAsia.SeqPC.coord |
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| Take a look: | | Take a look: |