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6 bytes added
, 14:56, 21 May 2015
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| For European ancestry: | | For European ancestry: |
− | $LASER/laser -g $HGDP/HGDP/HGDP.633K.euro.geno -c $HGDP/HGDP/HGDP.633K.euro.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-Euro & | + | $LASER/laser -g $SSREF/HGDP/HGDP.633K.euro.geno -c $SSREF/HGDP/HGDP.633K.euro.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-Euro & |
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| For East Asian ancestry: | | For East Asian ancestry: |
− | $LASER/laser -g $HGDP/HGDP/HGDP.633K.easia.2.geno -c $HGDP/HGDP/HGDP.633K.easia.2.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-EAsia & | + | $LASER/laser -g $SSREF/HGDP/HGDP.633K.easia.2.geno -c $SSREF/HGDP/HGDP.633K.easia.2.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-EAsia & |
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| For Central/South Asian ancestry: | | For Central/South Asian ancestry: |
− | $LASER/laser -g $HGDP/HGDP/HGDP.633K.csasia.2.geno -c $HGDP/HGDP/HGDP.633K.csasia.2.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-CSAsia & | + | $LASER/laser -g $SSREF/HGDP/HGDP.633K.csasia.2.geno -c $SSREF/HGDP/HGDP.633K.csasia.2.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-CSAsia & |
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