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388 bytes added
, 22:12, 15 June 2014
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| 2 alleles (ins/del) : 136 (1.89) [89/47] #notice the difference insertion deletion ratios differences | | 2 alleles (ins/del) : 136 (1.89) [89/47] #notice the difference insertion deletion ratios differences |
| >=3 alleles (ins/del) : 0 (-nan) [0/0] | | >=3 alleles (ins/del) : 0 (-nan) [0/0] |
| + | |
| + | #passed singletons only |
| + | vt peek all.genotypes.bcf -f "FILTER.TPASS&&INFO.AC==1" |
| + | |
| + | #passed indels of length 1 only |
| + | vt peek all.genotypes.bcf -f "FILTER.TPASS&&LEN==1" |
| + | |
| + | #passed indels of length >4 |
| + | vt peek all.genotypes.bcf -f "FILTER.TPASS&&LEN>1" |
| + | |
| + | #passed singletons of length 4 or insertions of length 3 |
| + | vt peek all.genotypes.bcf -f "FILTER.TPASS&&(LEN==4||DLEN==3)" |
| | | |
| == Comparison with other data sets == | | == Comparison with other data sets == |