1,102
edits
Changes
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Revision as of 22:12, 15 June 2014
, 22:12, 15 June 2014→Summary
2 alleles (ins/del) : 136 (1.89) [89/47] #notice the difference insertion deletion ratios differences
2 alleles (ins/del) : 136 (1.89) [89/47] #notice the difference insertion deletion ratios differences
>=3 alleles (ins/del) : 0 (-nan) [0/0]
>=3 alleles (ins/del) : 0 (-nan) [0/0]
#passed singletons only
vt peek all.genotypes.bcf -f "FILTER.TPASS&&INFO.AC==1"
#passed indels of length 1 only
vt peek all.genotypes.bcf -f "FILTER.TPASS&&LEN==1"
#passed indels of length >4
vt peek all.genotypes.bcf -f "FILTER.TPASS&&LEN>1"
#passed singletons of length 4 or insertions of length 3
vt peek all.genotypes.bcf -f "FILTER.TPASS&&(LEN==4||DLEN==3)"
== Comparison with other data sets ==
== Comparison with other data sets ==
