User contributions
24 August 2017
14 June 2017
4 January 2017
14 April 2016
6 March 2016
BamUtil: gapInfo
Rules
+26
BamUtil: recab
Parameters
+1,246
BamUtil: recab
Skip Records with any of the Specified Flags (--buildExcludeFlags, --applyExcludeFlags)
-22
BamUtil: dedup
Skip Records with any of the Specified Flags (--excludeFlags)
-109
BamUtil: dedup
Skip Records with any of the Specified Flags (--excludeFlags)
+143
BamUtil: dedup
Parameters
+43
BamUtil: clipOverlap
ASSUMPTIONS/RESTRICTIONS
+95
BamUtil: clipOverlap
Parameters
5 March 2016
BamUtil: clipOverlap
Skip Records with any of the Specified Flags (--excludeFlags)
-29
BamUtil: bam2FastQ
Parameters
+1,936
BamUtil: bam2FastQ
Usage
+102
BamUtil: bam2FastQ
Overview of the bam2FastQ function of bamUtil
-100
28 January 2016
28 October 2015
19 August 2015
30 June 2015
GotCloud: Creating a New Pipeline
Example Pipelines Created
+78
GotCloud: Creating a New Pipeline
Overall Pipeline Definition
+163
GotCloud: Creating a New Pipeline
Defining a New Pipeline
GotCloud: Creating a New Pipeline
no edit summary
+2,508
GotCloud: Creating a New Pipeline
Configure Each Step
+3,041
GotCloud: Creating a New Pipeline
Defining a New Pipeline
+1,180
23 June 2015
26 May 2015
22 May 2015
SeqShop: Calling Your Own Genome, May 2015
Annotation / Lookup against dbSNP
-12
SeqShop: Calling Your Own Genome, May 2015
Friday
+143
SeqShop: May 2015
no edit summary
+30
File:2015.05 - Workshop Closing.pdf
no edit summary
SeqShop: Calling Your Own Genome, May 2015
no edit summary
-304
21 May 2015
SeqShop: Calling Your Own Genome, May 2015
FEEDBACK!
+12
SeqShop: Ancestry On Your Own Genome, May 2015
Visualizing Ancestry
+18
SeqShop: Ancestry On Your Own Genome, May 2015
Estimate ancestry
+6
SeqShop: Ancestry On Your Own Genome, May 2015
Visualizing Ancestry
+1
SeqShop: Ancestry On Your Own Genome, May 2015
Estimate ancestry
+30
SeqShop: Ancestry On Your Own Genome, May 2015
Visualizing Ancestry
+5
SeqShop: Ancestry On Your Own Genome, May 2015
Estimate ancestry
+10
SeqShop: Ancestry On Your Own Genome, May 2015
Step 2: pileup --> seq
+5
SeqShop: Ancestry On Your Own Genome, May 2015
Setup your terminal
+6
SeqShop: Ancestry On Your Own Genome, May 2015
Step 1: bam --> pileup
-34
SeqShop: Association Analysis, May 2015
Download & Build EPACTS
SeqShop: Association Analysis, May 2015
Setup
+14
SeqShop: Association Analysis, May 2015
Setup
+218
SeqShop: Association Analysis, May 2015
no edit summary
+340
SeqShop: Ancestry On Your Own Genome, May 2015
Step 1: bam --> pileup
+5
SeqShop: Estimates of Genetic Ancestry Practical, May 2015
Return to Workshop Wiki Page
+227
