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| To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. | | To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>. |
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− | [[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012 | + | [[Media:LibStatGen.1.0.2.tgz|LibStatGen.1.0.2.tgz]] - Released 05/16/2012 |
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− | '''LibStatGen.1.0.1 Release Notes''' | + | '''LibStatGen.1.0.2 Release Notes''' |
| * Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq | | * Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq |
− | * BAM Additions: | + | * Additions: |
− | ** Ability to use require/exclude flags when reading | + | ** Add reverseComplement method to BaseUtilities.h |
− | ** CigarHelper for soft clipping
| + | |
− | ** Fixed bug in BamIndex that wasn't closing the file
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− | ** Additional cleanup/updates, see https://github.com/statgen/libStatGen/commits/master/bam for all changes between 10/10/2011 and 05/04/2012.
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− | * General Additions:
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− | ** Modifications to improve file handling/string processing
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− | ** Fixed some compile warnings
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− | ** Update Parameters class to always print warnings about unknown parameters to stderr
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− | ** Update PedigreePerson to create/delete the strings object
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− | ** Cleanup GenomeSequence to remove code that is also in BaseAsciiMap
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− | * Samtools Modifications:
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− | ** Do not use knetfile and fix compile warning
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| | | |
| ''' Older Releases''' | | ''' Older Releases''' |
| + | *[[Media:LibStatGen.1.0.1.tgz|LibStatGen.1.0.1.tgz]] - Released 05/04/2012 |
| + | ** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq |
| + | ** BAM Additions: |
| + | *** Ability to use require/exclude flags when reading |
| + | *** CigarHelper for soft clipping |
| + | *** Fixed bug in BamIndex that wasn't closing the file |
| + | *** Additional cleanup/updates, see https://github.com/statgen/libStatGen/commits/master/bam for all changes between 10/10/2011 and 05/04/2012. |
| + | ** General Additions: |
| + | *** Modifications to improve file handling/string processing |
| + | *** Fixed some compile warnings |
| + | *** Update Parameters class to always print warnings about unknown parameters to stderr |
| + | *** Update PedigreePerson to create/delete the strings object |
| + | *** Cleanup GenomeSequence to remove code that is also in BaseAsciiMap |
| + | ** Samtools Modifications: |
| + | *** Do not use knetfile and fix compile warning |
| + | |
| *[[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011 | | *[[Media:LibStatGen.1.0.0.tgz|LibStatGen.1.0.0.tgz]] - Released 10/10/2011 |
| + | ** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq |
| ** Initial release of libStatGen. It started from the library found in the deprecated StatGen repository. | | ** Initial release of libStatGen. It started from the library found in the deprecated StatGen repository. |
− | ** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
| |